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Contreras-Moreira, B., Jonsson, P.F. & Bates P.A. (2003). Structural context of exons in protein domains: implications for protein modelling and design. J. Mol. Biol. 333, 1057-1071.
Faraldo-Gomez, J.D., Smith, G.R. & Sansom, M.S.P. (2003). Molecular dynamics simulations of the bacterial outer membrane protein FhuA: a comparative study of the ferrichrome-free and bound states. Biophysical Journal. 85, 1406-1420.
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Smith, G.R., & Sternberg, M.J.E. (2003). Evaluation of the 3D-Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial. Proteins , 52(1), 74-79.
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Hilkens, C.M.U., Is'harc H., Lillemeier, B.F., Strobl, B., Bates P.A., Behrmann, I & Kerr, I.M. (2001). A region encompassing the FERM domain of Jak1 is nessessary for binding to the cytokine receptor gp130. FEBS Lett., Vol: 505 (2), P: 87-91
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Hogg, N. & Bates, P.A. (2000). Genetic analysis of integrin function in man: LAD-1 and other syndromes. Matrix Biol. 19(3): 211-222.
Huyton, T., Bates, P.A., Zhang, X., Sternberg, M.J.E. & Freemont, P.S. (2000). The BRCA1 C-Terminal (BRCT) domain: structure and function. Mutat. Res. 460(3-40): 319-332.
Stanley, P., McDowall, A., Bates, P.A., Brashaw, J. & Hogg, N. (2000). The second domain of intercellular adhesion molecule-1 (ICAM-1) maintains the structural integrity of the leucocyte function-associated antigen-1 (LFA-1) ligand-binding site in the first domain. Biochem. J., 351, 79-86.
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Stewart LM, Young S, Watson G, Mather SJ, Bates PA, Band HA, Wilkinson RW, Ross EL, Snary D. (1999). Humanisation and characterisation of PR1A3, a monoclonal antibody specific for cell-bound carcinoembryonic antigen. Cancer Immunol. Immunother. 47: 299-306.
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McDowall A, Leitinger B, Stanley P, Bates PA, Randi AM, Hogg N. (1998). The I domain of integrin LFA-1 is involved in a conformational change leading to high affinity binding to ligand ICAM-1. J. Biol. Chem. 273, 42, 27396-27403.
Bates PA, Dokurno, P, Freemont PS, Sternberg MJE (1998). Conformational analysis of the first observed non-proline cis-peptide bond occurring within the complementary determining region (CDR) of an antibody. J. Mol. Biol. 284: 549-555.
Dokurno P, Bates PA, Band HA, Stewart LMD, Lally JM, Burchell JM, Taylor-Papadimitriou J, Snary D, Sternberg MJE, Freemont PS (1998). Crystal structure at 1.95A resolution of the breast tumour-specific antibody SM3 complexed with its peptide epitope reveals novel hypervariable loop recognition. J. Mol. Biol. 284: 713-728.
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King, R. D., Sternberg, M. J. E., Muggleton, S. H. & Srinivasan, A. (1998). Recent developments in applying machine learning to drug design. In "Structure-Based Drug Design: Experimental and Computational Approaches" (ed. Codding, P. W.). Kluwer Academic Publishers, Dordrecht.
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Dokurno P, Lally JM, Bates PA, Taylor-Papadimitriou J, Band HA, Snary D, Freemont PS (1997). Crystallization of an antitumour antibody SM3 complexed with a peptide epitope. Acta Cryst. D53: 780-781.
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Lohmeyer, M., Harrison, P. M., Kannan, S., DeSantis, M., O'Reilly, N. J., Sternberg, M. J. E., Salomon, D. S. & Gullick, W. J. (1997). Chemical synthesis, structural modeling and biological activity of the epidermal growth factor-like domain of human cripto. Biochemistry, 36, 3837-3845.
Gabb, H. A., Jackson, R. M. & Sternberg, M. J. E. (1997). Modelling Protein Docking using Shape Complementarity, Electrostatics and Biochemical Information. J. Mol. Biol. 272, 106-120.
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Sternberg, M. J. E. (1991). PROMOT: A FORTRAN program to scan protein sequences against a library of known motifs. CABIOS, 7, 257-260.
Sternberg, M. J. E. & Islam, S. A. (1991). Protein sequences - homologies and motifs. Trends in Biotechnology, 9, 300-302.
Bates PA, Berendt A, Bennett R, Cabanas C, Craig A, Harvey J, McDowall A, Hogg N (1992), Leukocyte integrin activation. Pathologie Biologie, Vol: 40 (8), P: 785-788
Berendt AR, McDowall A, Craig AG, Bates PA, Sternberg MJE, Marsh K, Newbold CI, Hogg N (1992). The binding site on ICAM-1 for Plasmodium falciparum-infected erythrocytes overlaps, but is distinct from, the LFA-1 binding site. Cell, Vol: 68, p: 71-81
Saqi MAS, Bates PA, Sternberg MJE (1992). Towards an automatic method of predicting protein-structure by homology - an evaluation of suboptimal sequence alignments. Protein Eng., Vol: (4), P: 305-311
Bates PA, Luo JC, Sternberg MJE (1992), A predicted 3-dimensional structure for the carcinoembryonic antigen (cea). FEBS Lett., Vol: 301 (2), P: 207-214
Luo JC, Bates PA, Sternberg MJE. (1992). A predicted three-dimensional structure for the carcinoembryonic antigen (CEA). In "Peptides. Biology and Chemistry. Proceedings of the 1992 Chinese Peptide Symposium", (ed. Du, Y.-c., Tam, J.P. and Zhang, Y.-s.), pp. 115-119. ESCOM, Leiden.
Bates PA, Sternberg MJE. (1992). From protein sequence to structure. In "Protein Engineering-A Practical Approach", (ed. Rees, A.R., Sternberg, MJE and Wetzel, R.), pp. 117-141. Oxford University Press, Oxford.
Berendt AR, Craig AG, McDowall A, Bates PA, Roberts DJ, March K, Hogg N, Newbold CI (1992). Interactions of malaria-infected erythrocytes with ICAM-1. In "Leukocyte Adhesion Basic and Clinical Aspects", (ed. Gahmberg CG, Mandrup-Poulsen T, Wogensen Bach L, Hokfelt B), pp 271-285. Excerpta Medica, Amsterdam.
Pickett, S. D., Saqi, M. A. S. & Sternberg, M. J. E. (1992). Evaluation of the sequence template method for protein structure prediction - Descrimination of the (b/a)8- barrel fold. J. Mol. Biol. 228, 170-187.
Muggleton, S., King, R. D. & Sternberg, M. J. E. (1992). Protein secondary structure prediction using logic-based machine learning. Prot. Eng. 5, 647-657.
Muggleton, S., King, R. D. & Sternberg, M. J. E. (1992). Using logic for protein structure prediction. In "Proceedings of the 25th Hawaii International Conference on System Sciences", IEEE Computer Society Press, Los Alamitos.
Sternberg, M. J. E. & Gullick, W. J. (1992). A sequence motif in the transmembrane region of tyrosine kinase growth factor receptors. In "Patterns in Protein Sequence and Structure", (ed. Taylor, W. R.), pp. 255-262, Springer-Verlag, Berlin.
Gullick, W. J., Bottomley, A. C., Lofts, F. J., Doak, D. G., Mulvey, D., Newman, R., Crumpton, M. J., Sternberg, M. J. E. & Campbell, I. D. (1992). Three dimensional structure of the transmembrane region of the proto-oncogenic and oncogenic forms of the neu protein. EMBO J. 11, 43-48.
Sternberg, M. J. E., Lewis, R. A., King, R. D. & Muggleton, S. (1992). Modelling the structure and function of enzymes by machine learning. The Royal Society of Chemistry: Faraday Discussion, 93, 269-280.
Sternberg, M. J. E. (1992). Secondary structure prediction. Curr. Opin. in Struct. Biol. 2, 237-241.
Burroughs, A. K., Bulter, P., Sternberg, M. J. E. & Baum, H. (1992). Molecular mimicry in liver disease. Nature, 358, 377-378.
Walls, P. H. & Sternberg, M. J. E. (1992). New algorithm to model protein-protein recognition based on surface complementarity - Applications to antibody-antigen docking. J. Mol. Biol. 228, 277-297.
Hirst, J. D. & Sternberg, M. J. E. (1992). Prediction of structural and functional features of proteins and nucleic acid sequences by artificial neural networks. Biochemistry, 31, 7211-7218.
King, R. D., Muggleton, S., Lewis, R. A. & Sternberg, M. J. E. (1992). Drug design by machine learning : the use of inductive logic programming to model the structure-activity relationship of trimethoprim analogues binding to dihydrofolate reductase. Proc. Nat. Acad. Sci. USA, 89, 11322-11326.
Berendt AR, McDowall A, Craig AG, Bates PA, Newbold CI, Hogg N (1993). Interactions of the Plasmodium falciparum-infected erythrocyte with ICAM-1. In "Structure, Function and Regulation of Molecules involved in Leukocyte Adhesion", (ed. Lipsky, PE, Rothlein R, Kishimoto TK, Faanes RB, Smith CW), pp 92-103. Springer-Verlag, New York.
Bates PA, Islam SA, Sternberg MJE (1993), Structure of debrisoquinium sulfate. Acta Crystallographica Section C-crystal Structure Communications, Vol: 49 (eb), P: 300-303
Adzhubei, A. A. & Sternberg, M. J. E. (1993). Left-handed poly-proline II helices commonly occur in globular proteins. J. Mol. Biol. 229, 472-493.
Jackson, R. M. & Sternberg, M. J. E. (1993). Protein surface area defined. Nature, 366, 638.
Bax, B., Blaber, M., Ferguson, G., Sternberg, M. J. E. & Walls, P. H. (1993). Prediction of the three-dimensional structures of the nerve growth factor and epidermal growth factor binding proteins (kallikreins) and an hypothetical structure of the high molecular weight complex of epidermal growth factor with its binding protein. Protein Science, 2, 1229-1241.
King, R. D., Hirst, J., D, & Sternberg, M. J. E. (1993). New approaches to QSAR : Neural networks and machine learning. Perspectives in Drug Discovery and Design, 1, 279-290.
King, R. D., Muggleton, S., Srinivasan, A., Feng, C., Lewis, R. A. & Sternberg, M. J. E. (1993). Drug design using inductive logic programming. In "Proceedings of the 26th Hawaii International Conference on System Sciences", pp 646-655. IEEE Computer Society Press, Los Alamitos.
Baum, H., Butler, P., Davies, H., Sternberg, M. J. E. & Burroughs, A. K. (1993). Autoimmune disease and molecular mimicry: an hypothesis. TIBS, 18, 140-144. Pickett, S. D. & Sternberg, M. J. E. (1993). Empirical scale of side-chain conformational entropy in protein folding. J. Mol. Biol. 231, 825-839.
Luo, J.-c., Bates, P. A. & Sternberg, M. J. E. (1993). Knowledge-based computer modelling for the N-terminal domain of carcinoembryonic antigen (CEA). In "Peptides. Biology and Chemistry. Proceedings of the 1992 Chinese Peptide Symposium", (ed. Du, Y.-c., Tam, J. P. and Zhang, Y.-s.). pp. 115-119. ESCOM, Leiden.
Lofts, F. J., Hurst, H. C., Sternberg, M.J.E., & Gullick, W. J. (1993). Specific short transmembrane sequences can inhibit transformation by the mutant neu growth factor receptor in vitro and in vivo. Oncogenea, 8, 2813-2820.
Bodmer WF, Durbin H, Snary D, Stewart LM, Young S, Bates PA. (1994). Monoclonal Antibodies (patent): PR1A3 a colorectal cancer antibody: GB9317423.3
Stanley P, Bates PA, Harvey J, Bennett RI, Hogg N (1994). Integrin lfa-1 alpha-subunit contains an icam-1 binding-site in domain-v and domain-vi. EMBO J., Vol: 13 (8), P: 1790-1798
Hogg N, Landis RC, Bates PA, Stanley P, Randi AM (1994). The sticking point: how integrins bind to their ligands. Trends Cell Biol., Vol 4, p:379-382
Luo JC, Liu Q, Coombers CR, Bates PA, Sternberg MJE, (1994). Prediction of the three-dimensional structure of activin. In "Peptides Biology and Chemistry. Proceedings of the 1994 Chinese Peptide Symposium", (ed. Lu, G., Tam, J.P., and Cai, M.) ESCOM, Leiden.
Sternberg, M. J. E., King, R. D., Lewis, R. A. & Muggleton, S. (1994). Application of machine learning to structural molecular biology. Phil. Trans. R. Soc. Lond. B. 344, 365-371.
Saqi, M. A. S. & Sternberg, M. J. E. (1994). Identification of sequence motifs from a set of proteins with related function. Prot. Eng. 7, 165-171.
Sternberg, M. J. E. & Chickos, J. S. (1994). Protein side-chain conformational entropy derived from fusion data - Comparison with other empirical scales. Prot. Eng. 7, 149-155.
Jackson, R. M. & Sternberg, M. J. E. (1994). Application of scaled particle theory to model the hydrophobic effect: implications for molecular association and protein stability. Prot. Eng. 7, 371-383.
Sternberg, M. J. E., Hirst, J. D., Lewis, R. A., King, R. D., Srinivasan, A. & Muggleton, S. (1994). Application of machine learning to protein structure prediction and drug design. In "Advances in Molecular Bioinformatics", (ed. Schulze-Kremer, S.), pp. 1-8. IOS Press, Amsterdam.
Sternberg, M. J. E., Lewis, R. A., King, R. D. & Muggleton, S. (1994). Machine learning and biomolecular modelling. In "Machine Intelligence", ed. 13, pp. 193-212. Oxford University Press, Oxford.
Watt, S. M., Gschmeissner, S. E. & Bates, P. A. (1994). PECAM-1: its expression and function as a cell adhesion molecule on hemopoietic and endothelial cells. Leukemia & Lymphoma 17, 229-244.
King, R. D., Clark, D. A., Shirazi, J. & Sternberg, M. J. E. (1994). Inductive logic programming used to discover topological constraints in protein structures. In "Second International Conference on Intelligent Systems for Molecular Biology", pp. 219-226. AAAI Press, Menlo Park.
Hirst, J. D., King, R. D. & Sternberg, M. J. E. (1994). Quantitative structure-activity relationships: neural networks and inductive logic programming compared against statistical methods I. The inhibition of dihydrofolate reductase by pyrimidines. J. Comp. Aided. Mol. Design, 8, 404-420.
Hirst, J. D., King, R. D. & Sternberg, M. J. E. (1994). Quantitative structure-activity relationships: neural networks and inductive logic programming compared against statistical methods II. The inhibition of dihydrofolate reductase by triazines. J. Comp. Aided. Mol. Design, 8, 421-432.
Harrison, P. & Sternberg, M. J. E. (1994). Analysis and classification of disulphide connectivity in proteins. The entropic effect of cross-linkage. J. Mol. Biol. 244, 448-463
Adzhubei, A. A. & Sternberg, M. J. E. (1994). Conservation of polyproline II helices in homologous proteins: Implications for structure prediction by model building. Protein Science, 3, 2395-2410.
King, R. D., Clark, D. A., Shirazi, J. & Sternberg, M. J. E. (1994). On the use of machine learning to identify topological rules in the packing of b-strands. Prot. Eng. 7, 1295-1303.
Nelson RW, Bates PA, Rutishauser U. (1995). Protein determinants for specific polysialylation of the neural cell-adhesion molecule. J. Biol. Chem.Vol: 270 (29), P: 17171-17179
Holness CL, Bates PA, Littler AJ, Buckley CD, McDowall A, Bossy D, Hogg N, Simmons DL (1995). Analysis of the binding site on intercellular adhesion molecule 3 for the leukocyte integrin lymphocyte functionassociated antigen 1. J. Biol. Chem., vol: 270 (2), p:877-884
Watt SM, Gschmeissner SE, Bates PA (1995). Pecam-1 - its expression and function as a cell-adhesion molecule on hematopoietic and endothelial-cells. Leukemia & Lymphoma, Vol: 17 (3-4), P: 229-244
Chinery R, Bates PA, De A, Freemont PS (1995). Characterization of the single-copy trefoil peptides intestinal trefoil factor and ps2 and their ability to form covalent dimers. FEBS Lett., Vol: 357(1), P: 50-54
King, R. D., Clark, D. A., Shirazi, J. & Sternberg, M. J. E. (1995). Discovery of protein structural constraints in a deductive database using inductive logic programming. In "Machine Intelligence, ed. 14", 27-1269, Clarendon Press, Oxford.
King, R. D., Hirst, J. D. & Sternberg, M. J. E. (1995). A comparison of artificial intellignece methods for modelling pharmaceutical QSARs. Applied Artificial Intelligence, 9, 213-233.
Srinivasan, A., Muggleton, S., King, R. D. & Sternberg, M. J. E. (1995). Mutagenesis: ILP experiments in a non-determinate biological domain. In "Proceedings of the Inductive Logic Programming 1994 Workshop".
Sternberg, M.J.E. (1995) Protein Modelling. In "Oxford Textbook of Oncology" (ed. Peckham, M.), pp 468-474. Oxford University Press, Oxford.
Jackson, R., M. & Sternberg, M. J. E. (1995). A continuum model for protein-protein interactions : Application to the docking problem. J. Mol. Biol. 250, 258-275.
Russell, R.B. & Sternberg, M.J.E. (1995) How good are we? Current Biology, 5, 488-490.
Sternberg, M. J. E., Hegyi, H., Islam, S. A., Luo, J. & Russell, R. B. (1995). Towards an intelligent system for automatic assignment of domains in globular proteins. In "ISMB95 - Proceedings - Third International Conference on Intelligent Systems for Molecular Biology", (ed. Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S.). pp. 376-383. AAAI, Menlo Park, California.
Doig, A. J. & Sternberg, M. J. E. (1995). Side chain conformational entropy in protein folding. Protein Science, 4, 2247- 2251.
Islam, S. A., Luo, J. & Sternberg, M. J. E. (1995). Identification and analysis of domains in proteins. Prot. Eng. 8, 513- 525.
Ellis, S. W., Hathurst, G. P., Smith, G., Lightfoot, T., Wong, M. M., Simula, A. P., Ackland, M. J., Sternberg, M. J. E., Lennard, M. S. & Tucker, G. T. (1995). Evidence that aspartic acid 301 is a critical substrate contact residue in the active site of cytochrome P450 2D6. J. Biol. Chem. 270, 29055-29058.
King, R. D., Srinivasan, A. & Sternberg, M. J. E. (1995). Relating chemical activity to structure: an examination of ILP successes. New Gen. Computing 13, 411-433.
King, R. D., Sternberg, M. J. E., Srinivasan, A. & Muggleton, S. H. (1995). Knowledge discovery in a database of mutagenic chemicals. In "Proceedings of the MLnet Familiarization Workshop: Statistics, Machine Learning, and Knowledge Discovery" (ed. Kodratoff, Y., Nakaeizadeh, R. & Taylor, C.).
Chickos, J. S. & Sternberg, M. J. E. (1995). A Test Of The Applicability Of Small-Molecular Group Additivity Parameters In The Estimation Of Fusion Entropies Of Macromolecules. Thermochimica Acta 264, 13-26.
Rees, A.R., Wetzel, R. & Sternberg, M.J.E. (1992). Protein Engineering - A Practical Approach. Oxford University Press, Oxford.
Sternberg, M.J.E (1996) Protein Structure Prediction - A Practical Approach. Oxford University Press, Oxford.
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